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https://w.atwiki.jp/comma-plus/
This is comma-plus project page "comma plus" is the temporary name of a project by Ayumi KIZUKA and Kazuki MATSUMOTO. We have started this project from April 2010. This page is used to review the progress. If you have any message or question, please visit here. Products of This project is open-source software. SVN repository is here New ★★ (5 to 23 Nov. 2011) We ll exhibit Bird Platform (tentatively name) in Machinaka Art Gallery 2011.11.5(sat),23(wed) at Hakata-Station. Link http //tenjin.jp/mag/ This page allow sharing of information among us. (with using password) New ★ (14 to 15 May. 2011) We Exhibited Torikage / Mebuki in Design Festa vol.33 2011.5.14(sat),15(sun) at Tokyo-Bigsight. (It s a international art event.) Thanks for your coming! Then, artists from various countries brought their works, putting them on display or sell. Torikage / Mebuki used a white board. First, an audience uses a pen. Second, he or she should wait. Three, some birds may come flying, and some buds may come out and bloom trees, flowers, or berry. If you block light from a projector, the birds would flied off and the botanical would sporulate toward fall leaves. Many guests tried and enjoyed Torikage / Mebuki. Some people have been amazing. We have finished this work "Mebuki" or "Torikage", and have exhibited !! But, we ll developing Mebuki continuously, thanks. The full work photos are here Finished. Sample Movie is here Prototype Movie. "torikage" performance, at Ishibashi Museum of Art 1F, July 2009. today - , yesterday - , total - ｜ + + + ｜ ｜ ｜
https://w.atwiki.jp/cheapugg058/pages/16.html
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https://w.atwiki.jp/metalmetabo/pages/33.html
- visitors Metabolic network analysis of Streptomyces tenebrarius, a Streptomyces species with an active Entner-Doudoroff pathway nih.gov [HTML]I Borodina, C Scholler, A Eliasson, J … - Applied and …, 2005 - Am Soc Microbiol http //scholar.google.com/scholar?q=related vbWz9Ak9HjwJ scholar.google.com/ hl=ja as_sdt=2000 Streptomyces tenebrarius is an industrially important microorganism, producing an antibiotic complex that mainly consists of the aminoglycosides apramycin, tobramycin carbamate, and kanamycin B carbamate. When S. tenebrarius is used for industrial tobramycin ... Genome-scale reconstruction and in silico analysis of the Clostridium acetobutylicum ATCC 824 metabolic network J Lee, H Yun, AM Feist, BØ Palsson, SY Lee - Applied microbiology and …, 2008 - Springer http //scholar.google.com/scholar?q=related 6k93cgR0CzwJ scholar.google.com/ hl=ja as_sdt=2000 Page 1. GENOMICS AND PROTEOMICS Genome-scale reconstruction and in silico analysis of the Clostridium acetobutylicum ATCC 824 metabolic network Joungmin Lee Hongseok Yun Adam M. Feist Bernhard Ø. Palsson Sang Yup Lee ... Metabolic networks in motion 13C-based flux analysis nih.gov [HTML]U Sauer - Molecular systems biology, 2006 - nature.com http //scholar.google.com/scholar?q=related B0vTesydGZwJ scholar.google.com/ hl=ja as_sdt=2000 ... Curr Opin Biotechnol 16 350–355 | Article | PubMed | ISI | ChemPort |; Borodina I, Schöller C, Eliasson A, Nielsen J (2005) Metabolic network analysis of Streptomyces tenebrarius, a Streptomyces species with an active Entner–Doudoroff pathway. ... Combining genomics, metabolome analysis, and biochemical modelling to understand metabolic networks hindawi.com [PDF]O Fiehn - Comparative and Functional Genomics, 2001 - Wiley Online Library http //scholar.google.com/scholar?q=related -r0O-RbpfxsJ scholar.google.com/ hl=ja as_sdt=2000 ... Metabolomics. The obvious next step in metabolic network analysis is to try to determine metabolic snapshots in a broad and comprehensive way. ... 13 Christensen B, Nielsen J. Metabolic network analysis a powerful tool in metabolic engineering. ... A metabolic network analysis NMR experiment design tool with user interface-driven model construction for depth-first search analysis T Zhu, C Phalakornkule, S Ghosh, IE Grossmann, … - Metabolic …, 2003 - Elsevier http //scholar.google.com/scholar?q=related Ov3p-3IVXxsJ scholar.google.com/ hl=ja as_sdt=2000 A Windows program for metabolic engineering analysis and experimental design has been developed. A graphical user interface enables the pictorial, “on-screen” construction of a metabolic network. Once a model is composed, balance equations are automatically generated. ... Genome-scale reconstruction and analysis of the Pseudomonas putida KT2440 metabolic network facilitates applications in biotechnology plos.org [HTML]J Puchałka, MA Oberhardt, M Godinho, A Bielecka, … - PLoS Comput …, 2008 - dx.plos.org PLoS Computational Biology is an open-access. http //scholar.google.com/scholar?q=related V6wktboEeLMJ scholar.google.com/ hl=ja as_sdt=2000 Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae cshlp.org [HTML]MJ Herrgård, BS Lee, V Portnoy, BØ … - Genome research, 2006 - genome.cshlp.org http //scholar.google.com/scholar?q=related -IQUN4gFKUgJ scholar.google.com/ hl=ja as_sdt=2000 ... biomass composition). The integration of the metabolic network analysis and the transcriptional regulatory network model described above is accomplished using the regulated flux balance analysis approach (Covert et al. 2001). In ... Validation of a metabolic network for Saccharomyces cerevisiae using mixed substrate studies ulaval.ca [PDF]PA Vanrolleghem, P de Jong-Gubbels, … - Biotechnology …, 1996 - interscience.wiley.com http //scholar.google.com/scholar?q=related jaCs_pUlSXcJ scholar.google.com/ hl=ja as_sdt=2000 Page 1. ARTICLES Validation of a Metabolic Network for Saccharomyces cerevisiae Using Mixed Substrate Studies Peter A. Vanrolleghem,*,† Patricia de Jong-Gubbels,‡ Walter M. van Gulik,§ Jack T. Pronk,‡ Johannes P. van Dijken,‡ and Sef Heijnen† ... Metabolic‐flux analysis of Saccharomyces cerevisiae CEN. PK113‐7D based on mass isotopomer measurements of 13C‐labeled primary metabolites WA Winden, JC Dam, C Ras, RJ Kleijn, JL … - FEMS yeast …, 2005 - Wiley Online Library Skip to Main Content. ... http //scholar.google.com/scholar?q=related fM6Xi9-F_GIJ scholar.google.com/ hl=ja as_sdt=2000 The efficiency of multi-target drugs the network approach might help drug design arxiv.org [PDF]P Csermely, V Agoston, S Pongor - Trends in pharmacological sciences, 2005 - Elsevier http //scholar.google.com/scholar?q=related U0rlpj3tgrYJ scholar.google.com/ hl=ja as_sdt=2000 ... 6111–6121. Full Text via CrossRef | View Record in Scopus | Cited By in Scopus (53). 8 B. Papp et al., Metabolic network analysis of the causes and evolution of enzyme dispensability in yeast, Nature 429 (2004), pp. 661–664. Full Text via CrossRef | View Record in Scopus |.
https://w.atwiki.jp/orange_sherbet/pages/37.html
This is Masumi. I am sorry for making a new page without any permission... if anyone thinks this is inappropriate, please delete the page. If interested you may take a look ( ) also I hope this relieves you from stress. ? lol Doing this project, I figured out how there are so many funny expressions in Japanese that does not exist in English. Like what we talked randomly during discussion, we talked about how "doki-doki" "sara-sara" does not really exist. Onomatopoeia, right? Then how can people express the feelings in English?! If you were to explain "doki-doki" in English, wouldn t it be so hard? It may sound like saying it roundabout. whatshouldmacallit. Expression - Japanese people might be shy in expressing something, so they have these very useful expression words. In contrast, American people do not need them because they are not shy! I am sorry for making random analysis. I know this has nothing to do with the project... Just out of curiosity, does Tagalog have any onomatopoeias? Some Asian language such as Japanese and Korean has them. Or does anyone know any other language that has onomatopoeias? -- Jin (2008-02-20 00 58 32) where is the edit this page button? or am i just going crazy? -- courtney (2008-02-20 01 41 35) cause actually i just wanted to say that there is nothing wrong with having a random discussion page. we re just cool like that. also i wanted to say....out project was the best. no offense to the other groups or anything... -- 名無しさん (2008-02-20 01 42 25) also....all lanugages have onomatop.... yeah. they all have them. but japanese is DEFNITELY one of the languages with the most. in english if we wanted to express doki doki, it woudl just be like....." i was sooo nervous that my hands were sweating!" or soemthing like that. basically we would use other phenomenon to *explain* the feeling rather than rely on the connotation of an onomatopea word! -- 名無しさん (2008-02-20 01 45 33) lol, thanx~!! I thought some ppl might be "donbiki"ed (translation "uhh, what the hell") and yeah! our project IS awesome!!! -- masumi (2008-02-20 16 04 34) oops, I meant, by making random page, I thought ppl would be donbikied by me lolz. btw, I made the edit button just for courtney! yeah, too bad you have to explain the feeling, which is pretty time consuming... dokidoki ("my heart is twinkling and twirling along with the heartpump, with or with no hope of something coming up...") ahh dunno-- -- masumi (2008-02-20 16 10 50) 名前 コメント extra I ve found some pages related to onomatopoeia issues. http //blog.livedoor.jp/fairypot/archives/51312664.html "Should Onomatopoeias in Japanese comics be translated?" http //www.howtodrawmanga.com/kdms1/kdms1000.html こんなものまであるのか！（笑） extra pointless thing I thought this was funny. http //www.youtube.com/watch?v=AJSTj9e9MQ0 How do you ... translate TOKIMEKI!!! note I am not a fan of wat don t worry lol Masumi Moto courtney, feb 20 21 30 hahaha thank you so much!! im lost without the "edit page" button... but dont you think its more fun to describe your feelings like that?? you can be more creative!! Edit this page whee
https://w.atwiki.jp/chex/pages/300.html
Carnage Heart EXA Wiki in 2ch This wiki is written about Carnage Heart EXA, a latest work of the Carnage Heart series. Searching and or Now on Sale! Release Date 2010/10/28 Price (jp ver.) 5880 yen (UMD)/4700 yen (DL) Price (en ver.) $29.99 / €24.99 / £19.99 (DL) Correspondence to Data Install (necessary capacity is 204M.) Privilege of Reservation The Melody of Iron(kotetsu no shirabe) ( a CD recorded 40 BGMs) Under Distribution of the Trial Version! (probably, jp ver. only) In the trial version you can play this game up to the middle of the scenario mode and almost use bodies, equipment, and chips. If you buy the release version later, you can take over data from the trial version. Download is from here. Please try playing. Request about Use of “SATLOKE” Please input character strings of owner name, team name, and file name as uniquely as possible. Otherwise these will be a cause of confusion. Moreover, please update your rating score at least once by yourself for increasing the number of times of update if you register your team as team for rating. You can refer to Rating about its detail, and to help of SATLOKE or Procedure for Participation in Tournament about the detail of how to use SATLOKE. Tournament Schedule http //chehl.main.jp/index.php?target=tournament Threads 【PSP】カルネージハートエクサ 35機目 (the main thread) http //toro.2ch.net/test/read.cgi/handygame/1394883385/ カルネージハートエクサ避難所2 (the spare of the main thread) http //jbbs.livedoor.jp/bbs/read.cgi/game/51000/1295150424/ したらば - 大会スレ3 (the thread about tournaments) http //jbbs.shitaraba.net/bbs/read.cgi/game/51000/1326623574/l50 カルネージハートエクサ 機体をコメントしてもらうスレ (the thread in order for you to be advised on your OKE) http //jbbs.livedoor.jp/bbs/read.cgi/game/51000/1297942861 Questionnaires Which type of OKE are you presently developing? 選択肢 投票 Two-Legged (385) Multi-Legged (307) Hover (211) Vehicle (162) Flying (161) We were looked after by Mr. Kujira on CHP. On CHE … 選択肢 投票 He revive (279) He doesn’t revive (150) I will take over from his work (79) When have you begun to play the Carnage Heart series from? (one vote per one person) 選択肢 投票 From the First or EZ (82) From ZEUS or ZEUS2 (16) From CHP (53) From CHE (151) You are the - th a total of designer. Today - person(s) came here, yesterday - person(s) did so. Requests of Editing Wiki etc. If you request editing the Wiki, anyone may edit the Wiki meeting its request. Please here write comments of the requests.
https://w.atwiki.jp/childreninfksm_en/
Ministry of Internal Affairs and Communications(MIC) express the preparations to receive the afflicted people on their website. (Updated on 19th January, 2012) Here is the information of the preparations to receive the afflicted people in each prefectures. →Refecense → PDF Here is the information of the preparations to receive the public housing and temporary housing. →Ministry of Land, Infrastructure and Transport disaster information HP (All information are described in Japanese only.) 2012 Evacuation progam during summer vacation. ■【To know the society, and change for the power;"Mirai Camp"】 ■【Fukui Prefecture Fukui City】Fukufuku camp for kid s smile! ■【Hyogo Prefecture Akashi City】Cheer up your mind! Summer camp in Akashi ■【United States】University of California support Study Abroad in summer vacation (completely free) for College high school students in the affected area. http //www45.atwiki.jp/childreninfksm_en/tag/2012+summer+vacation This is the wiki collectively information of shelter for the afflicted people in Fukushima where many people had large damage due to the accident of the first nuclear power plant.We share the information from 【Fukushima network for protecting the children from nuclear 「http //kofdomofukushima.at.webry.info/」】founded by the civic organization," Fukushima revival conference from nuclear power plant " in May,1.2011. If you want to know how to edit this page, you would know everyone can edit this page easily, and please refer http //www45.atwiki.jp/childreninfukushima/pages/91.html (written by in Japanese for the wiki participant about the edit of wiki, using the template and tag collection. If you, your friends and your family know the effective information, you can participate in this website. We were established in May,9.2011. , and we hope the information will be more useful for the people who want to know more informations. ★We hope you to refer these information as the index of 【http //www45.atwiki.jp/childreninfukushima】 for foreigners. Though We share these updated information with a few people in this system, we need you to inquiry to opponent, thank you. search for the Refuge Local name or administrative divisions Hokkaido Tohoku Area Hokkaido Aomori Iwate Yamagata Miyagi Fukushima Nagano Fukui Kanto Area IbarakiTochigi Gumma Saitama Chiba Tokyo Kanagawa search for by the object (written by Japanese;from the left icon,"Damage certification;,Evacuation area;Voluntary evacuation;Mothers and children s evacuation;Only the childen s evacuation.) " #ref error ：ご指定のファイルが見つかりません。ファイル名を確認して、再度指定してください。 (.8%8E%E3%81%82%E3%82%8A) Tag Cloud Foreign Countries Italy Long Stay Hokkaido Tohoku Area Voluntary evacuation Only the Children's evacuation pregnant women who expectant mother Evacuate on summer holidays Voluntary Evacuation Nagano Koshinetsu Area Yamagata Kanto Yokohama Damage certification Kinki Area Mothers Childen's evacuation Only Children's evacuation Hokuriku Area Fukui Prefecture Kanto Area Kanagawa Evacuate on summer holidays Foreign Countries Afflicted people Mothers Childen's evacuation acua Evacuate during summer holiday Fukui Evacuation directive district Homestay Free for the participation Free for Fukushima people Reflesh Temporary refuge Tokai Area Aizu Fukushima Afflicted people 2011 Winter Program 2012spring vacation 2012 summer vacation How to to claim expenditure concerning shelter to TEPCO. customer service representative of consultation concerning amends whole of nuclear damage http //www.tepco.co.jp/en/index-e.html started by Aprill 28,2011. Fukushima Nuclear Compensation Office (Call center) Phone Number ０１２０－９２６－４０４ ※Note not to call the wrong number reception time ９：００～２１：００ http //www.tepco.co.jp/en/index-e.html Web Master Profile elico Web Project Coordinator mother of 2 little cute kids★ Birth/ Nihonmatsu City, Fukushima Pre. Growing / Fukushima City, Fukushima Pre. Contact us in Japanese → savechildreninfukushima@gmail.com Contact in English → coffee-flavor5@mail.goo.ne.jp (Translator; Akiko Ayabe)
https://w.atwiki.jp/naobe/pages/78.html
ネットワークに戻る RFC2616概要 HTTP/1.1 RFC6265概要 HTTP状態管理機構 パーセントエンコーディング（URLエンコード） URLで意味を持つコードと混同する日本語などのバイナリや特殊記号を16進形式にして、先頭に%を付加した文字に変換する。正確に言うと、非予約文字、予約文字以外を変換する。 項目 説明 非予約文字 ASCIIのコード範囲内の英字（大文字・小文字）、数字、ハイフン “-”、ピリオド “.”、アンダースコア “_”、チルダ “~” 予約文字 URIを表す符号。ASCIIのコード範囲内のコロン “ ”、スラッシュ “/”、疑問符 “?”、シャープ “#”、角括弧 “[”、“]”、単価記号 “@”、感嘆符 “!”、ドル記号・ペソ記号 “$”、アンパサンド “ ”、アポストロフィー・シングルクオート “ ”、丸括弧 “(”、“)”、アスタリスク “*”、正符号・加算記号 “+”、コンマ “,”、セミコロン “;”、等号 “=” name=%E8%8F%85%E7%9B%B4%E4%BA%BA UTF-8で、%E8%8F%85：菅, %E7%9B%B4 直, %E4%BA%BA 人 x-www-form-urlencoded(URLエンコード) POSTのフォームデータをエンコードする。%を付加する方式は、パーセントエンコーディングと同じ。パーセントエンコーディングの予約文字も変換している スペースは"+"に変換。Javaのソースを見ると、英数字、"-","_", ".","*"以外を変換する BASE64 Wikipediaより データを64種類の印字可能な英数字のみを用いて、それ以外の文字を扱うことの出来ない通信環境にてマルチバイト文字やバイナリデータを扱うためのエンコード方式 7ビットのデータしか扱うことの出来ない電子メールにて広く利用されている A–Z, a–z, 0–9 までの62文字と、記号2つ (+ , /) 、さらにパディング（余った部分を詰める）のための記号として = が用いられる 76文字ごとに改行コードが入る Cookie Wikipediaより クッキーを設定する際、どの要求に対してクッキー情報を送り返すのか、URLの範囲を指定する。 規定値は、クッキーを設定したサーバに対するすべての要求であり、対象を広げることも狭めることもできる。ただし広げる場合でも、トップレベルドメインより狭い範囲でなければならない。 またクッキーの有効期限は、通常はブラウザを終了するまでだが、指定した期限まではブラウザを再度起動しても保持されるように設定することができる。有効期限の情報も、サーバからブラウザにクッキー情報を送信する段階で付加される。 無期限という設定は出来ない。 詳細： http //www.studyinghttp.net/cookies リクエスト 全てテキスト。行(CRLF)で区切られる。 フォーマット リクエストラインは１行。ヘッダは複数行。 大項目 小項目 説明 リクエストライン メソッド GET,POST,PUTなどのどれか。 リクエストURL リクエストを処理するURI プロトコルバージョン HTTPのバージョン。【例】HTTP/1.1 ヘッダ HOST リクエスト先のホスト名。必須項目 空行 POSTのときにヘッダの終了を示すために挿入される メッセージボディ POSTのときにリクエストデータを出力する 【例】 GET http //example.jp/31/31-001.php HTTP/1.1 リクエストライン Host example.jp --+ User-Agent Mozilla/5.0 (Windows NT 5.1; rv 2.0.1) Gecko/20100101 Firefox/4.0.1 | Accept text/html,application/xhtml+xml,application/xml;q=0.9,*/*;q=0.8 +-- ヘッダ Accept-Language ja,en-us;q=0.7,en;q=0.3 | Accept-Encoding gzip, deflate | Accept-Charset Shift_JIS,utf-8;q=0.7,*;q=0.7 | Keep-Alive 115 | Connection keep-alive | Referer http //example.jp/31/ --+ Accept-CharsetでShift-JISの品質係数が１であるため、サーバは、Shift-JISでエンコードしたメッセージを返す。 POST http //example.jp/31/31-003.php HTTP/1.1 リクエストライン Accept image/gif, image/jpeg, image/pjpeg, image/pjpeg, application/vnd.ms-excel ヘッダ Referer http //example.jp/31/31-002.php Accept-Language ja User-Agent Mozilla/4.0 (compatible; MSIE 8.0; Windows NT 5.1; Trident/4.0; .NET CLR 1.1.4322; .NET CLR 2.0.50727; Inf oPath.1; .NET CLR 3.0.4506.2152; .NET CLR 3.5.30729) Content-Type application/x-www-form-urlencoded Accept-Encoding gzip, deflate Host example.jp Content-Length 65 Connection Keep-Alive Pragma no-cache name=%E8%8F%85%E7%9B%B4%E4%BA%BA mail=kan@aaa.jp gender=%E7%94%B7 メッセージボディ Hostヘッダ HTTP1.1では必須。POST/GETでのURIにHOSTを指定していなかった場合、Virtualホストを特定できない。そのためHostヘッダにHOST名を指定する。URIにホスト名があって、Hostヘッダにもホスト名がある場合はURIを優先する。URIにホスト名を指定することを強制すれば良いような気がするが。 Referer ヘッダの一種。リンク元のURLを示す。あるWebページのリンクをクリックして別のページに移動したときの、リンク元のページのこと。 改変、削除される場合があるので正しくリンクを示しているとは限らない。 セキュリティ上、問題となるのは、URLが秘密情報を含んでいる場合。たとえば、URLがセッションIDを含んでいる場合。なりすましに使われる可能性がある。 【例】 GET http //example.jp/31/31-002.php HTTP/1.1 Accept image/gif, image/jpeg, image/pjpeg, image/pjpeg, application/vnd.ms-excel, application/vnd.ms-powerpoint, appl ication/msword, application/x-shockwave-flash, application/x-ms-application, application/x-ms-xbap, application/vnd.ms -xpsdocument, application/xaml+xml, */* Referer http //example.jp/31/ Accept-Language ja User-Agent Mozilla/4.0 (compatible; MSIE 8.0; Windows NT 5.1; Trident/4.0; .NET CLR 1.1.4322; .NET CLR 2.0.50727; Inf oPath.1; .NET CLR 3.0.4506.2152; .NET CLR 3.5.30729) Accept-Encoding gzip, deflate Host example.jp Connection Keep-Alive http //example.jp/31/のHTMLのaタグからリクエストが発生したため、Refererヘッダがつく。 レスポンス 全てテキスト。行で区切られる。 フォーマット ステータスラインは１行。ヘッダ、ボディは複数行。 大項目 小項目 説明 ステータスライン プロトコルバージョン ステータスコード 1XX 処理継続、2XX 正常終了、3XX リダイレクト、4XX クライアントエラー、5XX サーバエラー テキストフレーズ レスポンスヘッダ Content-Length ボディのバイト数 Content-Type MIMEタイプ; charset=エンコーディング 空行 ヘッダの終わりを示す ボディ 【例】 HTTP/1.1 200 OK Date Wed, 04 May 2011 04 51 51 GMT Server Apache/2.2.14 (Ubuntu) X-Powered-By PHP/5.3.2-1ubuntu4.2 Vary Accept-Encoding Content-Length 20 Keep-Alive timeout=15, max=100 Connection Keep-Alive Content-Type text/html; charset=UTF-8 body 13 51 /body Content-type メディアタイプを示すエンティティヘッダ（メッセージボディに対する付随情報）。type "/" subtype *( ";" parameter )であらわされる。text/html; charset=utf-8など。charsetを追加すると出力の文字コードを示す。HTML文書にapplication/octet-streamを付けると、 多くの場合、Webブラウザはそれをダウンロードするか否か問い合わせるようになる。 Apacheの場合は、httpd.confの以下の設定でcharsetを指定する。 AddDefaultCharset UTF-8 Tomcatでは、JSPのpageディレクティブで設定する。 %@ page language="java" contentType="text/html; charset=Windows-31J" pageEncoding="Windows-31J" % http //www.atmarkit.co.jp/fjava/rensai3/mojibake01/mojibake01.html 参照
https://w.atwiki.jp/metalmetabo/pages/28.html
- visitors Application of regulatory sequence analysis and metabolic network analysis to the interpretation of gene expression data psu.edu [PDF]J Van Helden, D Gilbert, L Wernisch, M Schroeder, … - Computational …, 2001 - Springer http //scholar.google.com/scholar?q=related JS_4j3CP5nEJ scholar.google.com/ hl=ja as_sdt=2000 Comparative metabolic network analysis of two xylose fermenting recombinant Saccharomyces cerevisiae strains T Grotkjær, P Christakopoulos, J Nielsen, L … - Metabolic Engineering, 2005 - Elsevier http //scholar.google.com/scholar?q=related m6nOh8HQbaIJ scholar.google.com/ hl=ja as_sdt=2000 The recombinant xylose fermenting strain Saccharomyces cerevisiae TMB3001 can grow on xylose, but the xylose utilisation rate is low. One important reason for the inefficient fermentation of xylose to ethanol is believed to be the imbalance of redox co-factors. In the present ... The Edinburgh human metabolic network reconstruction and its functional analysis nih.gov [HTML]H Ma, A Sorokin, A Mazein, A Selkov, E … - Molecular systems …, 2007 - nature.com http //scholar.google.com/scholar?q=related pgWLepUKeS0J scholar.google.com/ hl=ja as_sdt=2000 ... A main objective of human metabolic network analysis is to see how it is related with human disease. More than 10 000 human genes (half of the whole genome) have been reported to be related with one or more human diseases in the OMIM database (Hamosh et al, 2005). ... Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms oxfordjournals.org [PDF]H Ma, AP Zeng - Bioinformatics, 2003 - Oxford Univ Press http //scholar.google.com/scholar?q=related SuHZgSLeNw8J scholar.google.com/ hl=ja as_sdt=2000 ... It is one of the main tasks of metabolic network analysis to find possible conversion pathways between two metabolites. There may be many different pathways between two metabolites, among them the shortest pathway is of particular interest for network analysis. ... Metabolic network analysis of an adipoyl-7-ADCA-producing strain of Penicillium chrysogenum elucidation of adipate degradation J Thykaer, B Christensen, J Nielsen - Metabolic Engineering, 2002 - Elsevier http //scholar.google.com/scholar?q=related gycTvJYwT9kJ scholar.google.com/ hl=ja as_sdt=2000 An adipoyl-7-ADCA-producing, recombinant strain of Penicillium chrysogenum was characterized by metabolic network analysis, with special focus on the degradation of adipate and determination of the metabolic fluxes. Degradation of the side-chain precursor, adipate, causes an ... Potential metabolic limitations in lysine production by Corynebacterium glutamicum as revealed by metabolic network analysis JA Hollander - Applied Microbiology and Biotechnology, 1994 - Springer http //scholar.google.com/scholar?q=related BwIeARCnafMJ scholar.google.com/ hl=ja as_sdt=2000 Corynebacterium glutamicum and closely related Brevi- bacterium species are the most important organisms used for the industrial fermentative production of ly- sine. Although wild-type strains do not excrete lysine at all, classical mutation programs have resulted in strains ... Metabolic flux and metabolic network analysis of Penicillium chrysogenum using 2D [13C, 1H] COSY NMR measurements and cumulative bondomer simulation WA van Winden, WM van Gulik, D … - Biotechnology and …, 2003 - Wiley Online Library http //scholar.google.com/scholar?q=related Jy6SBrqyeHAJ scholar.google.com/ hl=ja as_sdt=2000 Abstract At present two alternative methods are avail- able for analyzing the fluxes in a metabolic network (1) combining measurements of net conversion rates with a set of metabolite balances including the cofactor bal- ances, or (2) leaving out the cofactor balances and fitting the ... Metabolic‐flux and network analysis in fourteen hemiascomycetous yeasts LM Blank, F Lehmbeck, U Sauer - FEMS yeast research, 2005 - Wiley Online Library http //scholar.google.com/scholar?q=related ILl2ugZn3ZcJ scholar.google.com/ hl=ja as_sdt=2000 ... (5). Oxaloacetate14 mit was estimated using Eq. (6)[16] (6). 2.6Metabolic-network analysis. We used a previously constructed metabolic network [1,24], which consists of the PP pathway, glycolysis, TCA cycle, gluconeogenesis, malic enzyme and by-product formation reactions. ... 13C metabolic flux analysis W Wiechert - Metabolic Engineering, 2001 - Elsevier http //scholar.google.com/scholar?q=related Eat1pl-yJGQJ scholar.google.com/ hl=ja as_sdt=2000 ... 6. B. Christensen and J. Nielsen, Metabolic network analysis, a powerful tool in metabolic engineering. Adv. Biochem. Eng. ... 209–231. 7. B. Christensen and J. Nielsen, Metabolic network analysis of Penicillium chrysogenum using 13 C-labeled glucose. Biotechnol. Bioeng. ... Multiple knockout analysis of genetic robustness in the yeast metabolic network tau.ac.il [PDF]D Deutscher, I Meilijson, M Kupiec, E Ruppin - Nature genetics, 2006 - nature.com http //scholar.google.com/scholar?q=related X5cH6RUwUF0J scholar.google.com/ hl=ja as_sdt=2000 ... | PubMed |; Kitano, H. Biological robustness. Nat. Rev. Genet. 5, 826–837 (2004). | Article | PubMed | ISI | ChemPort |; Papp, B. , Pál, C. Hurst, LD Metabolic network analysis of the causes and evolution of enzyme dispensability in yeast. Nature 429, 661–664 (2004). ...
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- visitors In vivo analysis of intracellular amino acid labelings by GC/MS. C Wittmann, M Hans, E Heinzle - Analytical biochemistry, 2002 - mendeley.com ... TBDMS derivatization of amino acids is especially useful in metabolic network analysis, because M-57 fragments containing the entire carbon skeleton of the analyte can be observed by GC/MS with high signal intensities 8. The potential of the method is exemplified for ... Comparative metabolic flux analysis of lysine-producing Corynebacterium glutamicum cultured on glucose or fructose nih.gov [HTML]P Kiefer, E Heinzle, O Zelder, C … - Applied and …, 2004 - Am Soc Microbiol ... A comprehensive approach to 13 C tracer studies, labeling measurements by gas chromatography-mass spectrometry, metabolite balancing, and isotopomer modeling, was applied for comparative metabolic network analysis of lysine-producing Corynebacterium glutamicum ... It is all about metabolic fluxes nih.gov [HTML]J Nielsen - Journal of bacteriology, 2003 - Am Soc Microbiol http //scholar.google.com/scholar?q=related xAvLLrdbbNYJ scholar.google.com/ hl=ja as_sdt=2000 ... I. Experimental observations. Biotechnol. Bioeng. 55 305-316.[CrossRef] 21; Thykaer, J., B. Christensen, and J. Nielsen. 2002. Metabolic network analysis of an adipoyl-7-ADCA producing strain of Penicillium chrysogenum elucidation of adipate degradation.Metab. Eng. ... Using topology of the metabolic network to predict viability of mutant strains biomedcentral.com [PDF]Z Wunderlich, L Mirny - Genome Biology, 2005 - biomedcentral.com http //scholar.google.com/scholar?q=related sTavonuje7wJ scholar.google.com/ hl=ja as_sdt=2000 ... Ph.D. Thesis. University of Leeds; 1994. 14. Papp B, Pal C, Hurst LD Metabolic network analysis of the causes and evolution of enzyme dispensability in yeast. Nature 2004, 429(6992) 661-664. 15. Jeong H, Tombor B, Albert R, Oltvai ZN, Barabasi AL The large-scale ... Novel proteins, putative membrane transporters, and an integrated metabolic network are revealed by quantitative proteomic analysis of Arabidopsis cell … plantphysiol.org [HTML]H Eubel, EH Meyer, NL Taylor, JD Bussell, N O … - Plant …, 2008 - Am Soc Plant Biol http //scholar.google.com/scholar?q=related aCgbR-dAtyMJ scholar.google.com/ hl=ja as_sdt=2000 ... This is aided by a metabolic network analysis that reveals a tight integration of functions and highlights specific metabolite nodes that most probably represent entry and exit metabolites that could require transport across the peroxisomal membrane. ... High-throughput phenomics experimental methods for mapping fluxomes bjmu.cn [PDF]U Sauer - Current opinion in Biotechnology, 2004 - Elsevier http //scholar.google.com/scholar?q=related XvhSxXXwbn4J scholar.google.com/ hl=ja as_sdt=2000 ... From its early days when material fluxes were balanced within assumed reaction networks [7.], metabolic network analysis [6. and 8.] has matured to actually identify the topology of active reactions and pathways and to quantify the molecular flux through them on a variety of ... Use of genome-scale microbial models for metabolic engineering KR Patil, M Åkesson, J Nielsen - Current opinion in biotechnology, 2004 - Elsevier http //scholar.google.com/scholar?q=related oAOz5SBTVHAJ scholar.google.com/ hl=ja as_sdt=2000 ... incorporate genome-scale biological data. Genome-scale stoichiometric models of microorganisms represent a first step in this direction. FBA, flux balance analysis; MFA, metabolic flux analysis; MNA, metabolic network analysis. ... Network identification and flux quantification in the central metabolism of Saccharomyces cerevisiae under different conditions of glucose repression nih.gov [HTML]AK Gombert, M Moreira dos Santos, B … - Journal of …, 2001 - Am Soc Microbiol http //scholar.google.com/scholar?q=related R5V_AodxCrwJ scholar.google.com/ hl=ja as_sdt=2000 ... flux estimates. The use of 13 C-labeled substrates enables both identification of the metabolic network structure and quantification of the metabolic fluxes and is therefore referred to as metabolic network analysis (5). This kind ... Metabolic flux analysis of Escherichia coli K12 grown on 13C-labeled acetate and glucose using GC-MS and powerful flux calculation method freelogy.org [PDF]J Zhao, K Shimizu - Journal of biotechnology, 2003 - Elsevier http //scholar.google.com/scholar?q=related w1m-5IKYKpsJ scholar.google.com/ hl=ja as_sdt=2000 Structural and functional analysis of cellular networks with CellNetAnalyzer biomedcentral.com [HTML]S Klamt, J Saez-Rodriguez, ED Gilles - BMC Systems Biology, 2007 - biomedcentral.com http //scholar.google.com/scholar?q=related bzwlVku0FL8J scholar.google.com/ hl=ja as_sdt=2000 ... CNA extends its predecessor FluxAnalyzer, originally developed for metabolic network analysis[7], by new methods for signalling and regulatory networks, ie for networks where signal flows are dominating (in contrast to mass flows in metabolic networks). ...